PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1721910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 363aa    MW: 40074.7 Da    PI: 9.0599
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1721910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.56e-31541813124
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl+++k+ i++l+ ++ ++ s+++ +++ + ++n++ +        
  Lj4g3v1721910.1  54 GGKDRHSKVCTVRGLRDRRIRLSVPTAIELYDLQDRLGLSQPSKVVDWLLEASKTDIDKLPPLQIPNCSFSQFHHQDQYSGNDRLSlgvgglfy 147
                      79*************************************************************6666666643444444443444467888875 PP

              TCP  89 ...kaaksaakskksqksaasalnlakesrakararare 124
                         +    a +s++  +++  +++++  sr k ++++ e
  Lj4g3v1721910.1 148 dgtS----A-SSQSLMAKSRYNWDVDLVSRLKGKEDESE 181
                      4431....1.22222333333355555555555555333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.36955113IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-2755156IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTENSSKGYD QMKQEGTNEV KTERLISSNK ALSTSRQWTA FRNPRIVRVS RALGGKDRHS  60
KVCTVRGLRD RRIRLSVPTA IELYDLQDRL GLSQPSKVVD WLLEASKTDI DKLPPLQIPN  120
CSFSQFHHQD QYSGNDRLSL GVGGLFYDGT SASSQSLMAK SRYNWDVDLV SRLKGKEDES  180
EKGKCLMKET QDSAQKLFPI GINYNSSSSL PGFLNNAMTY NINSFQSEPS SSLSLSQFGS  240
HGVLFPYLQP DSNSMLQYPS NNNGSVVPFS SSLSASQLLF CPSSSATTPT SLFGNPHAPL  300
MTNSSAESSD PRQYNSNHVH TLSSGSSLMP HPFMPSLHPF SNSPLSRRLP TPFSSKLLDS  360
DNN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.41090.0pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138359.15e-97hypothetical protein PHAVU_009G202200g
TrEMBLA0A151S0B61e-104A0A151S0B6_CAJCA; Transcription factor TCP5
STRINGGLYMA17G08761.13e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5